Skip to main content

Taking a Closer Look at COVID-19’s Effects on the Brain

Posted on by Dr. Francis Collins

MRI of a brain damaged by COVID-19
Caption: Magnetic resonance microscopy showing lower part of a COVID-19 patient’s brain stem postmortem. Arrows point to light and dark spots indicative of blood vessel damage with no signs of infection by the coronavirus that causes COVID-19. Credit: National Institute of Neurological Disorders and Stroke, NIH

While primarily a respiratory disease, COVID-19 can also lead to neurological problems. The first of these symptoms might be the loss of smell and taste, while some people also may later battle headaches, debilitating fatigue, and trouble thinking clearly, sometimes referred to as “brain fog.” All of these symptoms have researchers wondering how exactly the coronavirus that causes COVID-19, SARS-CoV-2, affects the human brain.

In search of clues, researchers at NIH’s National Institute of Neurological Disorders and Stroke (NINDS) have now conducted the first in-depth examinations of human brain tissue samples from people who died after contracting COVID-19. Their findings, published in the New England Journal of Medicine, suggest that COVID-19’s many neurological symptoms are likely explained by the body’s widespread inflammatory response to infection and associated blood vessel injury—not by infection of the brain tissue itself [1].

The NIH team, led by Avindra Nath, used a high-powered magnetic resonance imaging (MRI) scanner (up to 10 times as sensitive as a typical MRI) to examine postmortem brain tissue from 19 patients. They ranged in age from 5 to 73, and some had preexisting conditions, such as diabetes, obesity, and cardiovascular disease.
The team focused on the brain’s olfactory bulb that controls our ability to smell and the brainstem, which regulates breathing and heart rate. Based on earlier evidence, both areas are thought to be highly susceptible to COVID-19.

Indeed, the MRI images revealed in both regions an unusual number of bright spots, a sign of inflammation. They also showed dark spots, which indicate bleeding. A closer look at the bright spots showed that tiny blood vessels in those areas were thinner than normal and, in some cases, leaked blood proteins into the brain. This leakage appeared to trigger an immune reaction that included T cells from the blood and the brain’s scavenging microglia. The dark spots showed a different pattern, with leaky vessels and clots but no evidence of an immune reaction.

While those findings are certainly interesting, perhaps equally noteworthy is what Nath and colleagues didn’t see in those samples. They could find no evidence in the brain tissue samples that SARS-CoV-2 had invaded the brain tissue. In fact, several methods to detect genetic material or proteins from the virus all turned up empty.

The findings are especially intriguing because there has been some suggestion based on studies in mice that SARS-CoV-2 might cross the blood-brain barrier and invade the brain. Indeed, a recent report by NIH-funded researchers in Nature Neuroscience showed that the viral spike protein, when injected into mice, readily entered the brain along with many other organs [2].

Another recent report in the Journal of Experimental Medicine, which used mouse and human brain tissue, suggests that SARS-CoV-2 may indeed directly infect the central nervous system, including the brain [3]. In autopsies of three people who died from complications of COVID-19, the NIH-supported researchers detected signs of SARS-CoV-2 in neurons in the brain’s cerebral cortex. This work was done using the microscopy-based technique of immunohistochemistry, which uses antibodies to bind to a target, in this case, the virus’s spike protein. Also last month, in a study published in the journal Neurobiology of Disease, another NIH-supported team demonstrated in a series of experiments in cell culture that the SARS-CoV-2 spike protein could cross a 3D model of the blood-brain barrier and infect the endothelial cells that line blood vessels in the brain [4].

Clearly, more research is needed, and NIH’s National Institute of Neurological Disorders and Stroke has just launched the COVID-19 Neuro Databank/Biobank (NeuroCOVID) to collect more clinical information, primarily about COVID-19-related neurological symptoms, complications, and outcomes. Meanwhile, Nath and colleagues continue to explore how COVID-19 affects the brain and triggers the neurological symptoms often seen in people with COVID-19. As we learn more about the many ways COVID-19 wreaks havoc on the body, understanding the neurological symptoms will be critical in helping people, including the so-called Long Haulers bounce back from this terrible viral infection.


[1] Microvascular Injury in the Brains of Patients with Covid-19. Lee MH, Perl DP, Nair G, Li W, Maric D, Murray H, Dodd SJ, Koretsky AP, Watts JA, Cheung V, Masliah E, Horkayne-Szakaly I, Jones R, Stram MN, Moncur J, Hefti M, Folkerth RD, Nath A. N Engl J Med. 2020 Dec 30.

[2] The S1 protein of SARS-CoV-2 crosses the blood-brain barrier in mice. Rhea EM, Logsdon AF, Hansen KM, Williams LM, Reed MJ, Baumann KK, Holden SJ, Raber J, Banks WA, Erickson MA. Nat Neurosci. 2020 Dec 16.

[3] Neuroinvasion of SARS-CoV-2 in human and mouse brain. Song E, Zhang C, Israelow B, et al. J Exp Med (2021) 218 (3): e20202135.

[4] The SARS-CoV-2 spike protein alters barrier function in 2D static and 3D microfluidic in-vitro models of the human blood-brain barrier. Buzhdygan TP, DeOre BJ, Baldwin-Leclair A, Bullock TA, McGary HM, Khan JA, Razmpour R, Hale JF, Galie PA, Potula R, Andrews AM, Ramirez SH. Neurobiol Dis. 2020 Dec;146:105131.


COVID-19 Research (NIH)

Avindra Nath (National Institute of Neurological Disorders and Stroke/NIH)

NIH Support: National Institute of Neurological Disorders and Stroke; National Institute on Aging; National Institute of General Medical Sciences; National Cancer Institute; National Institute of Mental Health


  • Carol H. says:

    Perhaps others have already noted similarities… I am not trying to usurp this forum but to shed light on similarity that might end up helping both groups.

    These posts show symptoms and devastation similar to what my son experienced for years after tick borne infections. His health changed so drastically — impacting so many systems but he was not believed and there does not seem to be much interest in helping such persons.

    It is my hope that those studying these long haul impacts might somehow bring to light the suffering of others who have ongoing confusing illness and shared information might enlightened physicians and researchers. I hope the research in long haul COVID will also help Lyme/tick-borne infection patients who have suffered so long without it appears much interest by the CDC or NMH or traditional infectious disease physicians.

    I have read of long COVID sufferers giving up and taking their lives. Sadly this has been the way of many long haul Lyme/tick-borne disease patients. Validation and support are so critical, as is assistance by a loved-one to keep a daily record of the often changing/cyclical symptoms. The common denominator seems to me to be neurological=but it is a mystery I hope will unfold more rapidity now that sadly, so many people are experiencing similar. .

    • Rhonda says:

      3.5 years post covid and I have severe long haulers , can’t work. No SS or disability payment yet at 62 !! I now have painful neuro symptoms like a headache all around entire head …. on Prednisone for 3 time , no hope in sight

      • Rebecca says:

        More than 50 years ago, I had mononucleosis. I’m still living with it, but hell, I’ve had all that time to figure it out. I know I have to avoid high sulfur foods because my thyroid is sensitive to cruciferous veggies. And everything in the onion family. I’m doing OK now. My best guess is that I am a slow metabolizer of sulfur compounds. I know for a fact that the covid virus replicates in a matrix of iron and sulfur, and that it uses a sulfur pathway to get into cells. My hypothesis is that viruses exploit our sulfur metabolism. Now, with sulfur metabolism, there’s a wide range of efficiency. Those of us with slow metabolism are screwed. My recommendation is first, try the gluten free diet, and see if that helps with the headaches. I had severe headaches also, and it took me twelve years to figure it out! Also, avoid dairy. Dairy is high in sulfur. Beans are high in sulfur. My father had gout. I don’t have gout, but beans were giving me a lot of bloating and inflammation. Watch for things like table pepper and ginger, or ginger ale. You’ll know because the next day you can’t get out of bed and get going. Avoid soy like it is rat poison! It’s a bean, after all, and it’s in a lot of condiments and even some gf foods. But with a gluten free, dairy and bean free diet, you might begin to make progress as I have done. Another recommendation is smoothies. I’m not a big salad fan, so I use red leaf lettuce and parsley in my smoothie, a banana, fruit juice that’s 100% juice, and some berries. This, plus eating only the egg yolks of my fried eggs in the morning seem to be beneficial. My guess is that the leafy greens are a natural source of sulfates. Sulfates are a good form of sulfur and you need them. You don’t need thiocyanates nor sulfites. Good luck going forward!

  • Dorlaine says:

    A family member had Covid a few months later she received her vaccine and a booster 6 months later.
    She now started having a jerk in her neck.
    She was 19 at the start of having Covid is now 20.
    Can this be due to Covid?

  • Sharon L Proctor says:

    I got covid Dec 28. I’m still sick. Shaky inside and makes me dizzy and nauseous. My hands jerks so much. I have very strange jerking that happens, it is in different parts of my body throughout the day. The body aches and headaches have been awful. Had a fever for days and have had a problem eating and got terrible acid stomach that also lasted days. Finally can eat but the lasting weakness and fatigue andddd dizzy nausea are outlasting all other symptoms. I feel so bad for everyone who got covid.

  • Kay C. says:

    I am 75 years old and was in great health until…I developed the Covid 19 in January 2021 that presented as Alzheimer’s. Doctors gave me that diagnosis. I have no recall for approx 6 days after being hospitalized. I was then transferred to a Neuro/Rehab Center.for approx 3wks returning home. I then had the vaccines with side effects of falling, unable to walk w/o assistance, which slowly disappeared. I was then sent to a Nursing Rehab Center where after 6 wks was I tested “out” of my diagnosis of Alzheimer’s.
    Are there other reports of this bizarre happening? Going forward should I have the vaccine booster?

  • 1 2

Leave a Comment